I've taken the time to run back and obtain every BSAA Emblem and record where to get them, including in-game map for reference.
Credits go to the originators of discovering the BSAA Emblem list (untranslated & translated), Vorbag for cleaning up some descriptions as well.
3-10-09 (3:28am): All Videos are now Live! Enjoy! ^^;
3-11-09: 2-2 issue resolved. Party!
5-2-09: Added minor annotations to 5-2 & 6-1.
(Note: All videos were edited, encoded, and uploaded the same way, but YT hasn't given all the videos an HQ option. If you want to watch them in HQ, add &fmt=18 to the end of the link and you'll be golden! ^^)
Chapter 1-2 Public Assembly (3 Emblems):
Chapter 2-1 Storage Facility (5 Emblems):
Chapter 2-2 Train Station (3 Emblems):
Chapter 3-1 Marshlands (4 Emblems):
Chapter 3-2 Execution Ground (2 Emblems) &
Chapter 3-3 Oil Field - Drilling Facilities (1 Emblem):
Chapter 4-1 Caves (3 Emblems) &:
Chapter 4-2 Worship Area (1 Emblem):
Chapter 5-1 Underground Garden (1 Emblem),
Chapter 5-2 Experimental Facility (1 Emblem) &
Chapter 5-3 Uroboros Research Facility (3 Emblems):
Chapter 6-1 Ship Deck (3 Emblems):